RnoEX6007894 @ rn6
Exon Skipping
Gene
ENSRNOG00000025581 | Vwa2
Description
von Willebrand factor A domain containing 2 [Source:RGD Symbol;Acc:1562000]
Coordinates
chr1:277724401-277728170:+
Coord C1 exon
chr1:277724401-277724973
Coord A exon
chr1:277727201-277727752
Coord C2 exon
chr1:277728045-277728170
Length
552 bp
Sequences
Splice sites
3' ss Seq
CTATTCTGCTTCTCCTCCAGGCT
3' ss Score
10.13
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGGCTTCCGTCAGGCCAAGGCCTTTGTGAAGCGCTTTGTGCAGGCCGTGCTGAGTGAGGACTCCCGAGCCCGTGTTGGGGTAGCCAGTTACAGCAGGGATCTAATGGTGGCGGTGCCTGTTGGGGAGTACCAGCATGTGCCAGACCTGGTCAGGATCCTTGACAGCATTCCCTTCAGCGGTGGCCCAACTCTGACCGGGAGTGCCTTGCTGCAGGTGACAGAGCATGGCTTTGGGAGTGCCAGCCGGACAGGACAGGACAGGCCACGCAGAGTAGTGGTTCTGCTCACTGAATCACACGCCCAAGATGAGGTGGCTGGGCCAGCAGATCATGCGAGGGCCCGGGAGCTGCTACTCCTGGGCATGGGAAATGAGCTCATGCGGGCAGAGCTGGAGAGGATCACGGGTAGCCGGAAGCATGTGATCATCCACACAGACCCTCGGGACATGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGTAGCCAACCACGGCCAG
Seq A exon
GCTGCCAGGCACAGTCACTAGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCAGTGGGAGGTGAGAACTTTGCTCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGCTTTGATGTGAATCCTGACGTGACACAGGTTGGCCTGGTGGTATACGGTAACCAGGTGCAGACCGCTTTCGGACTTGACACCCATCCCACCCGTGCTTCTGTGCTGCGGGCCATGAGCCAGGCCCCCTACCTAGGGGGTGTGGGCTCTGCTGGCACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGAGCCCGCCCCGGTGTCCCCAAGGCTGTGGTGATGCTCACAGGTGGCAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGACAATGGCATCTCAGTCTTGGTAATGAGTGTGGGAGCTGTCCTCAAGGAGGCAGTGAGGAGGCTTGCTGGTCCACGGGACTACCTGATCCATGTGGCAGCTTACACAGACCTGCGGTACCATCAGGACACGCTCATCGAGTGGCTATGCAGAG
Seq C2 exon
AAGCCAAGCGGCCAGTCAGCCTCTGCAAACCTAGCCCATGCATGAATGAAGGCACCTGTATCCTGAAGAACGGCAGTTACCGATGCGAGTGCTGGGGTGGCTGGGAAGGCCCCCACTGTGAGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025581-'10-11,'10-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.099 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=89.1)
A:
PF0009223=VWA=WD(100=93.5)
C2:
PF0000822=EGF=WD(100=72.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGACAGAGCATGGCTTTG
R:
ACAGGTGCCTTCATTCATGCA
Band lengths:
347-899
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]