GgaEX0013180 @ galGal3
Exon Skipping
Gene
ENSGALG00000008980 | VWA2
Description
NA
Coordinates
chr6:29206481-29210765:+
Coord C1 exon
chr6:29206481-29207062
Coord A exon
chr6:29207365-29207916
Coord C2 exon
chr6:29210643-29210765
Length
552 bp
Sequences
Splice sites
3' ss Seq
GTTTGCACTCTTTTATCTAGGCT
3' ss Score
7.5
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCGCTATAAGGCGTTCCTCAAGAGGTTCCTTCAAGCAGTGATGGGCCGGGACTCGCCAGCAAACGTGGGGGTGGCCCAGTACGATACCAGCATCAGGATACCCATTGAAGTAGGACAGCACAAGGATGTGTTTGGTCTCATGAAGAGCATTGATGCTTTGAATTTCAGCGGGGGAGGAACCCTGACGGGCAGAGCCCTGCGGTACGTTGCTCAGCATGGTTTTAGGAGAACCCCGGTGTTTGCAGATGTGCTGGATGACCTCCCACGCGTGGTTGTCTTGCTCACTGACTCCAAGTCCCAAGACCCAGTGGCAGAAGCTGCCAAGTATGCAAGGGACAGAGATCTGTTGTTGATTGGTGTAGGCAGCAGCTTTGTGAGGGCAGAGCTGGCTGAAGTGACTGGCAACCCAAAGCAGACCGTTGTCTACTCAGACCCCCAGGATTTGTTCAACAGGATCCCAGAGCTGCAAAGGAGAATTTGCAGTGTGAACAGTCCTGAAG
Seq A exon
GCTGCCAGGTGCAGTCTCTTGATTTGGTGTTTGCAGTGGATGCCTCAGCTGGAGTTGGCCTGGCGAATTTTCTGCAGCTGAGGGACTTTGTCAGGAGCAGCTCTTGGCAATTCACCATCAACCGGGATGTCACCCAAATTGCCCTTGTGGCCTATGGTAGCAGAGCTCGCACCGTGTTCGCTTTGGACACCTACACAAACAATTCAGCTCTCCTCCAAGCCATCAACCAGATGCCTTTCCTTGGGGACGTGGCCTCTGCCAGCAGTGCCTTACTCCACATTCACAGTGATGTGATGACGGTACAGAAAGGAGCAAGGCCTGGTGTCAGCAAGGTGGTGGTGCTGCTCACAAATGGAGGTGGCATGGAGGATGCAGCTGCCCCGGCTCGGCACCTGAGAGACAACGGTGTCATGGTGTTTGTGGTTGTCATTGGGGATGCAGAGAGGGACACACTGCTGAGGGTTGCTGGGTCTCCCAGTTACCTGGTGCACATCTCTTCCTATGAAGATCTGCAGCGTTACCAAGACCTCATCACTGAAAGAATCTGTGAAG
Seq C2 exon
AAGCAAAAAGCCCTGTGAACCTGTGCAAACCCAACCCGTGCATGAACCAGGGCGTGTGCATCCTCAGGCCAGGAAGCTACTGGTGTGAATGCCATGGATGGGAAGGACCCCACTGCGAGAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008980-'13-14,'13-12,14-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=88.7)
A:
PF0009223=VWA=WD(100=93.5)
C2:
PF0000822=EGF=WD(100=71.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGTGCTGGATGACCTCCC
R:
CCATCCATGGCATTCACACCA
Band lengths:
358-910
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]