BtaEX6100975 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006860 | VWA2
Description
von Willebrand factor A domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24709]
Coordinates
chr26:35036743-35041008:+
Coord C1 exon
chr26:35036743-35036798
Coord A exon
chr26:35039368-35039475
Coord C2 exon
chr26:35040436-35041008
Length
108 bp
Sequences
Splice sites
3' ss Seq
AACAGGCATCTCTCTGGTAGGCC
3' ss Score
4.4
5' ss Seq
GCGGTACGT
5' ss Score
10.27
Exon sequences
Seq C1 exon
CTGGAAGAGAGTGTTCTTCACCCACCCCACCACCTGCTACAGGACCACCTGCCCAG
Seq A exon
GCCCCTGTGACTCACAGCCCTGCCAGAATGGAGGCACGTGTGTTCCAGAAGGACCGGACAGGTACCACTGCCTCTGCCCACCAGCCTTTGGAGGGGAAGCCAACTGCG
Seq C2 exon
CTCTGAATCTGAGCCTGGAGTGCAGAGTGGACGTCCTGTTCCTGCTGGCCAGCTCAGCAGACGCCACCCTGGAGGGCTTCCAGCGGGCCAAGGCCTTCGTGAAGCGGTTTGTGCGGGCAGCGCTGACCCGAGACTCCCAAGCGCGCGTGGGTGTGGCCCTCTACGGCGCGAAGCTGACCGTGGCCGTGCCAGTGGGCGAGTATCAGGATGTGCCAGACCTGATTTGGAGCCTCGACGGCCTGCCCTTCGACGGTGGCGCCACTCTGACGGGCCGGGCCCTACGGCAGGTGGCAGAGCGCGGCTTCGGGAGTGCCCCCAGGACAGGCCTGGACCAGCCTCGACGGGCGGTGGTCCTGATGACCGAGGCGCGCTCCCAGGATGAGGTGGCCGGCCCGGCGGGCTTCGCGAGGGCCCGGCAGCTGCTCCTGCTGGGTGTGGGCAGCGAGGACGTGCGGGCGGAACTGGAGATGATCACTGGCGGCCCGGAGCGCGTGCTGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006860-'8-15,'8-12,10-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=83.8)
C2:
PF0009223=VWA=WD(100=89.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCTTCACCCACCCCAC
R:
ACATCCTGATACTCGCCCACT
Band lengths:
257-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]