RnoEX0098623 @ rn6
Exon Skipping
Gene
ENSRNOG00000025581 | Vwa2
Description
von Willebrand factor A domain containing 2 [Source:RGD Symbol;Acc:1562000]
Coordinates
chr1:277721526-277724973:+
Coord C1 exon
chr1:277721526-277721581
Coord A exon
chr1:277723432-277723539
Coord C2 exon
chr1:277724401-277724973
Length
108 bp
Sequences
Splice sites
3' ss Seq
AATGGGTGTCTCTCTGGTAGGCC
3' ss Score
7.33
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
CTGGAAGAGAGTGTTCCAGACTCACCCCGCCAATTGCTACAGAACCATCTGTCCAG
Seq A exon
GCCCCTGTGACTCCCAGCCATGCCAAAATGGAGGCACGTGCATTCCAGAAGGTGTGGACAGGTACCACTGTCTCTGCCCACTGGCATTCGGAGGGGAAGTCAACTGTG
Seq C2 exon
CCCCGAAGCTGAGCCTGGAATGCAGGATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACTCCGGAGGGCTTCCGTCAGGCCAAGGCCTTTGTGAAGCGCTTTGTGCAGGCCGTGCTGAGTGAGGACTCCCGAGCCCGTGTTGGGGTAGCCAGTTACAGCAGGGATCTAATGGTGGCGGTGCCTGTTGGGGAGTACCAGCATGTGCCAGACCTGGTCAGGATCCTTGACAGCATTCCCTTCAGCGGTGGCCCAACTCTGACCGGGAGTGCCTTGCTGCAGGTGACAGAGCATGGCTTTGGGAGTGCCAGCCGGACAGGACAGGACAGGCCACGCAGAGTAGTGGTTCTGCTCACTGAATCACACGCCCAAGATGAGGTGGCTGGGCCAGCAGATCATGCGAGGGCCCGGGAGCTGCTACTCCTGGGCATGGGAAATGAGCTCATGCGGGCAGAGCTGGAGAGGATCACGGGTAGCCGGAAGCATGTGATCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025581-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.099
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=86.5)
C2:
PF0009223=VWA=WD(100=89.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCAATTGCTACAGAACCA
R:
GTCTGGCACATGCTGGTACTC
Band lengths:
248-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]