GgaEX1063524 @ galGal3
Exon Skipping
Gene
ENSGALG00000008980 | VWA2
Description
NA
Coordinates
chr6:29205592-29207062:+
Coord C1 exon
chr6:29205592-29205647
Coord A exon
chr6:29206254-29206361
Coord C2 exon
chr6:29206481-29207062
Length
108 bp
Sequences
Splice sites
3' ss Seq
CCTTCTTTGGTTCCATTTAGACC
3' ss Score
8.74
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
Exon sequences
Seq C1 exon
ACTGAAAAGAGTCTCAGTAAAACACCCATCCAGATGCTTCCGAACCGTATGTACAG
Seq A exon
ACCCTTGTGACTCCCAGCCATGCCAGAATGGGGGTACATGTGTCCCAGAGGGACTGGACAAGTACCACTGCCTGTGCCCAGTGGGATATGGAGGAGGCACACACTGTG
Seq C2 exon
CACCAAAGCTGAGCCTTGAGTGTGGTGTGGACCTCCTTTTCCTGATGGACAGCTCAGCAGGGGTCACACTGGAGGGATTCCTGCGCTATAAGGCGTTCCTCAAGAGGTTCCTTCAAGCAGTGATGGGCCGGGACTCGCCAGCAAACGTGGGGGTGGCCCAGTACGATACCAGCATCAGGATACCCATTGAAGTAGGACAGCACAAGGATGTGTTTGGTCTCATGAAGAGCATTGATGCTTTGAATTTCAGCGGGGGAGGAACCCTGACGGGCAGAGCCCTGCGGTACGTTGCTCAGCATGGTTTTAGGAGAACCCCGGTGTTTGCAGATGTGCTGGATGACCTCCCACGCGTGGTTGTCTTGCTCACTGACTCCAAGTCCCAAGACCCAGTGGCAGAAGCTGCCAAGTATGCAAGGGACAGAGATCTGTTGTTGATTGGTGTAGGCAGCAGCTTTGTGAGGGCAGAGCTGGCTGAAGTGACTGGCAACCCAAAGCAGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008980-'9-11,'9-10,11-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PU(5.6=10.0)
A:
PF0000822=EGF=PD(91.7=89.2)
C2:
PF0009223=VWA=WD(100=88.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCCAGATGCTTCCGAACC
R:
CACATCCTTGTGCTGTCCTACT
Band lengths:
243-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]