GgaEX1063523 @ galGal3
Exon Skipping
Gene
ENSGALG00000008980 | VWA2
Description
NA
Coordinates
chr6:29204662-29206361:+
Coord C1 exon
chr6:29204662-29204794
Coord A exon
chr6:29205592-29205647
Coord C2 exon
chr6:29206254-29206361
Length
56 bp
Sequences
Splice sites
3' ss Seq
TACTAAACTTCCCATTTCAGACT
3' ss Score
7.49
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GCTGCAAAGTTGAATCCTTCCCTTGTGAACGCAGAACTCTGGAGACTGCGAAGGAGCTGGCTGGAAGCTATGTCTGCTGGAAAGGCTCAAAGCAGCAGAATGTAATGCATGCTTCACTCTGCCCTTTTTACAG
Seq A exon
ACTGAAAAGAGTCTCAGTAAAACACCCATCCAGATGCTTCCGAACCGTATGTACAG
Seq C2 exon
ACCCTTGTGACTCCCAGCCATGCCAGAATGGGGGTACATGTGTCCCAGAGGGACTGGACAAGTACCACTGCCTGTGCCCAGTGGGATATGGAGGAGGCACACACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008980-'8-10,'8-8,9-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=PU(5.6=10.0)
C2:
PF0000822=EGF=PD(91.7=89.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAAGCTATGTCTGCTGG
R:
AGGCAGTGGTACTTGTCCAGT
Band lengths:
147-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]