BtaEX6100976 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006860 | VWA2
Description
von Willebrand factor A domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24709]
Coordinates
chr26:35033293-35039475:+
Coord C1 exon
chr26:35033293-35033425
Coord A exon
chr26:35036743-35036798
Coord C2 exon
chr26:35039368-35039475
Length
56 bp
Sequences
Splice sites
3' ss Seq
TTTGATTTCTTGGGTCGTAGCTG
3' ss Score
4.96
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
ACTGCAAGGTCCACCCTCACCCCTGTGAGCGCAAGACTCTGGAGACGATCAGGGAACTTGCTGGCCTCGCCCCGTGCTGGAGAGGATCTCGGGGCACTGATGCTGTGCTGGCTGCCCTCTGTCCCTTCTCCAG
Seq A exon
CTGGAAGAGAGTGTTCTTCACCCACCCCACCACCTGCTACAGGACCACCTGCCCAG
Seq C2 exon
GCCCCTGTGACTCACAGCCCTGCCAGAATGGAGGCACGTGTGTTCCAGAAGGACCGGACAGGTACCACTGCCTCTGCCCACCAGCCTTTGGAGGGGAAGCCAACTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006860-'7-12,'7-11,8-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0000822=EGF=WD(100=83.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGATCAGGGAACTTGCTGG
R:
GAACACACGTGCCTCCATTCT
Band lengths:
135-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]