MmuEX6033840 @ mm10
Exon Skipping
Gene
ENSMUSG00000025082 | Vwa2
Description
von Willebrand factor A domain containing 2 [Source:MGI Symbol;Acc:MGI:2684334]
Coordinates
chr19:56902236-56905586:+
Coord C1 exon
chr19:56902236-56902368
Coord A exon
chr19:56903467-56903522
Coord C2 exon
chr19:56905479-56905586
Length
56 bp
Sequences
Splice sites
3' ss Seq
CTGCATTTCTTGAATTGTAGCTG
3' ss Score
6.12
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
ACTGCAGGGTGGAACCTCATCCCTGTGAGCGGAGGACGCTGGAGACCGTCAGGGAGCTCGCTGGCAATGCCTTGTGCTGGAGAGGATCAAGGCAAGCAGACACTGTGCTGGCTCTGCCCTGTCCCTTCTACAG
Seq A exon
CTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAG
Seq C2 exon
GCCCCTGTGACTCCCAGCCCTGCCAAAATGGAGGCACGTGCATTCCAGAAGGTGTGGATAGGTACCACTGTCTCTGCCCACTGGCATTCGGAGGGGAAGTCAACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025082-'1-16,'1-10,12-16=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0000822=EGF=WD(100=86.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGGATCAAGGCAAGCAG
R:
GGGCAGAGACAGTGGTACCTA
Band lengths:
134-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types