DreEX6069850 @ danRer10
Exon Skipping
Gene
ENSDARG00000075441 | vwa2
Description
von Willebrand factor A domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-100302-1]
Coordinates
chr12:30204434-30206996:-
Coord C1 exon
chr12:30206867-30206996
Coord A exon
chr12:30204625-30204680
Coord C2 exon
chr12:30204434-30204541
Length
56 bp
Sequences
Splice sites
3' ss Seq
TGTTTCACATTGTCTTACAGGTA
3' ss Score
11.31
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCTGTAAGGTGGAGTCATACCCATGTGTGCAGAAAACCCTGGAGACGGTCAAACAGCTTCAGGGAAACTTTGTCTGCTGGAAAGGGTCCAAGAGATACTCGGCATACACGTCCCTGTGCCCTCATTACAG
Seq A exon
GTATAACAAAGTTTACAGGCAACACCCTGCTGTCTGTCACAGAACTATTTGTCCAG
Seq C2 exon
ACCCCTGTGACTCTCAGCCCTGTCAGAATGGGGGGACGTGTGTTTCTGAAGGACTGGATAAATACCGGTGCGAGTGTCCTGCTGGTTACGCCAATGACCCCAATTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075441-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0000822=EGF=WD(100=83.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATGTGTGCAGAAAACCCT
R:
TCTGACAGGGCTGAGAGTCAC
Band lengths:
138-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]