RnoEX6007895 @ rn6
Exon Skipping
Gene
ENSRNOG00000025581 | Vwa2
Description
von Willebrand factor A domain containing 2 [Source:RGD Symbol;Acc:1562000]
Coordinates
chr1:277720446-277723539:+
Coord C1 exon
chr1:277720446-277720578
Coord A exon
chr1:277721526-277721581
Coord C2 exon
chr1:277723432-277723539
Length
56 bp
Sequences
Splice sites
3' ss Seq
TGCATTTCCTTGAATTGTAGCTG
3' ss Score
6.59
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
ACTGCAGGGTGGAAGCTTACCCGTGTGAGCGGAGAACGCTGGAGACCATGAGAGAGCTCGCCAGCAATGCCTTGTGCTGGAGAGGATCAAGGCAGGCGGACACTGTGCTGGCTGTGCCCTGTCCCTTCTACAG
Seq A exon
CTGGAAGAGAGTGTTCCAGACTCACCCCGCCAATTGCTACAGAACCATCTGTCCAG
Seq C2 exon
GCCCCTGTGACTCCCAGCCATGCCAAAATGGAGGCACGTGCATTCCAGAAGGTGTGGACAGGTACCACTGTCTCTGCCCACTGGCATTCGGAGGGGAAGTCAACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025581-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0000822=EGF=WD(100=86.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGCCTTGTGCTGGAGAGG
R:
ACCTGTCCACACCTTCTGGAA
Band lengths:
132-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]