MmuEX6033839 @ mm10
Exon Skipping
Gene
ENSMUSG00000025082 | Vwa2
Description
von Willebrand factor A domain containing 2 [Source:MGI Symbol;Acc:MGI:2684334]
Coordinates
chr19:56903467-56906962:+
Coord C1 exon
chr19:56903467-56903522
Coord A exon
chr19:56905479-56905586
Coord C2 exon
chr19:56906390-56906962
Length
108 bp
Sequences
Splice sites
3' ss Seq
AACGGGTATCTCTCTGGTAGGCC
3' ss Score
6.26
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
CTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAG
Seq A exon
GCCCCTGTGACTCCCAGCCCTGCCAAAATGGAGGCACGTGCATTCCAGAAGGTGTGGATAGGTACCACTGTCTCTGCCCACTGGCATTCGGAGGGGAAGTCAACTGTG
Seq C2 exon
CCCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025082-'12-14,'12-11,18-14=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.073
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=86.5)
C2:
PF0009223=VWA=WD(100=89.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCAACTGCTACAGAACC
R:
CTGATCAGGTCCGGCACATG
Band lengths:
257-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types