BtaEX6101334 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018941 | CPXM2
Description
Bos taurus carboxypeptidase X (M14 family), member 2 (CPXM2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206057]
Coordinates
chr26:43842645-43851311:-
Coord C1 exon
chr26:43851115-43851311
Coord A exon
chr26:43849849-43850028
Coord C2 exon
chr26:43842645-43842942
Length
180 bp
Sequences
Splice sites
3' ss Seq
CATTCTGAATTGTCTCCCAGGGT
3' ss Score
7.52
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GTGAGCCCGAGTTCCACTACATCGCCGGGGCCCATGGCAACGAGGTGCTGGGCCGGGAGCTGATGCTTTTGCTGATGCAGTTTCTGTGCCAGGAGTACTTGGCGGGGAACTTGCGCATCGTCCGCCTGGTGGAGGAGACCCGGATCCACATACTCCCCTCCCTGAACCCCGACGGCTACGAGAAGGCCTACGAGGGG
Seq A exon
GGTTCCGAGCTGGGAGGCTGGTCCCTGGGCCGTTGGACCCATGACGGGATTGACATCAACAACAACTTTCCTGACTTAAACACGCTGCTCTGGGAGGCGGAGGACCGACAGAACATCCCAAGGAAAGTGCCCAATCACTATATCGCCATCCCCGAGTGGTTTCTGTCTGAAAATGCCACG
Seq C2 exon
GTGGCAGTAGAGACCAGGGCAGTCATAGCCTGGATGGAAAAAATCCCCTTCGTGTTGGGTGGCAACCTGCAGGGGGGCGAGCTGGTGGTGGCCTACCCCTACGACATGGTGAGGTCCCTGTGGAAGACCCAGGAGCATACCCCCACGCCCGACGACCATGTCTTCCGCTGGCTGGCCTACTCCTACGCCTCCACTCACCGCCTCATGACAGACGCCAGGAGGAGGGTGTGCCACACGGAAGACTTCCAGAAGGAGGATGGGACCGTCAATGGGGCTTCCTGGCACACTGTGGCTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018941-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.000 C2=0.035
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(21.0=100)
A:
PF0024619=Peptidase_M14=FE(19.1=100)
C2:
PF0024619=Peptidase_M14=FE(32.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGTTTCTGTGCCAGGAG
R:
AGGGACCTCACCATGTCGTAG
Band lengths:
242-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]