HsaEX7006824 @ hg38
Exon Skipping
Gene
ENSG00000121898 | CPXM2
Description
carboxypeptidase X, M14 family member 2 [Source:HGNC Symbol;Acc:HGNC:26977]
Coordinates
chr10:123761872-123768722:-
Coord C1 exon
chr10:123768526-123768722
Coord A exon
chr10:123766973-123767152
Coord C2 exon
chr10:123761872-123762169
Length
180 bp
Sequences
Splice sites
3' ss Seq
ACACTCTCACTTGTCTCCAGGGC
3' ss Score
8.95
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GTGAGCCCGAGTTCCACTACATCGCGGGGGCCCACGGCAATGAGGTGCTGGGCCGGGAGCTGCTGCTGCTGCTGGTGCAGTTCGTGTGTCAGGAGTACTTGGCCCGGAATGCGCGCATCGTCCACCTGGTGGAGGAGACGCGGATTCACGTCCTCCCCTCCCTCAACCCCGATGGCTACGAGAAGGCCTACGAAGGG
Seq A exon
GGCTCGGAGCTGGGAGGCTGGTCCCTGGGACGCTGGACCCACGATGGAATTGACATCAACAACAACTTTCCTGATTTAAACACGCTGCTCTGGGAGGCAGAGGATCGACAGAATGTCCCCAGGAAAGTTCCCAATCACTATATTGCAATCCCTGAGTGGTTTCTGTCGGAAAATGCCACG
Seq C2 exon
GTGGCTGCCGAGACCAGAGCAGTCATAGCCTGGATGGAAAAAATCCCTTTTGTGCTGGGCGGCAACCTGCAGGGCGGCGAGCTGGTGGTGGCGTACCCCTACGACCTGGTGCGGTCCCCCTGGAAGACGCAGGAACACACCCCCACCCCCGACGACCACGTGTTCCGCTGGCTGGCCTACTCCTATGCCTCCACACACCGCCTCATGACAGACGCCCGGAGGAGGGTGTGCCACACGGAGGACTTCCAGAAGGAGGAGGGCACTGTCAATGGGGCCTCCTGGCACACCGTCGCTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121898-'24-33,'24-29,26-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.000 C2=0.057
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(21.0=100)
A:
PF0024619=Peptidase_M14=FE(19.1=100)
C2:
PF0024619=Peptidase_M14=PU(68.8=98.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTGTCAGGAGTACTTGGC
R:
GTGTGTTCCTGCGTCTTCCAG
Band lengths:
255-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains