RnoEX0024337 @ rn6
Exon Skipping
Gene
ENSRNOG00000015902 | Cpxm2
Description
carboxypeptidase X (M14 family), member 2 [Source:RGD Symbol;Acc:1310955]
Coordinates
chr1:204060725-204065443:-
Coord C1 exon
chr1:204065247-204065443
Coord A exon
chr1:204063614-204063793
Coord C2 exon
chr1:204060725-204061022
Length
180 bp
Sequences
Splice sites
3' ss Seq
CCATTCTGAATCTTCTCCAGGGT
3' ss Score
8.44
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTGAGCCCGAGTTCCACTACATCGCAGGGGCCCATGGCAATGAGGTTCTGGGCCGAGAGCTGCTGCTGCTGCTGCTGGAGTTCCTCTGCCAGGAGTACTTGGCGCAGAACACACGCATCGTCCGCTTGGTGGAGGAGACTCGGATTCACATTCTACCCTCCCTCAATCCTGATGGCTATGAAAAGGCCTATGAAGGA
Seq A exon
GGTTCCGAGTTGGGAGGCTGGTCCCTGGGACGTTGGACCCATGATGGCATTGACATCAACAACAACTTTCCGGATTTAAACACGCTGCTCTGGGAGGCAGAGGACCGGCAGAACGCCCCAAGGAAAGTTCCCAACCACTACATTGCCATCCCTGAGTGGTTTCTGTCTGAGAATGCCACA
Seq C2 exon
GTGGCCATGGAGACCAGAGCCATCATTGCTTGGATGGAGAAGATCCCGTTTGTGCTGGGAGGCAACCTACAGGGGGGTGAGCTGGTTGTAGCATACCCCTACGACATGGTGCGGTCCCTGTGGAAGACCCAGGAGCACACCCCGACACCCGACGATCACGTGTTCCGCTGGCTGGCTTACTCTTATGCCTCCACTCACCGCCTCATGACCGATGCCAGGAGGCGAGTGTGCCACACAGAGGAATTTCAGAAGGAAGAAGGCACCGTCAATGGGGCTTCCTGGCACACCGTGGCTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015902-'11-15,'11-13,12-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.017 C2=0.035
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(21.0=100)
A:
PF0024619=Peptidase_M14=FE(19.1=100)
C2:
PF0024619=Peptidase_M14=FE(32.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCCGAGTTCCACTACAT
R:
CCAGCACAAACGGGATCTTCT
Band lengths:
254-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]