GgaEX7006614 @ galGal4
Exon Skipping
Gene
ENSGALG00000009693 | CPXM2
Description
carboxypeptidase X (M14 family), member 2 [Source:HGNC Symbol;Acc:HGNC:26977]
Coordinates
chr6:31289514-31291927:-
Coord C1 exon
chr6:31291731-31291927
Coord A exon
chr6:31290714-31290893
Coord C2 exon
chr6:31289514-31289811
Length
180 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCCCTTCAATCTAAGGGC
3' ss Score
7.88
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
Exon sequences
Seq C1 exon
GTGAACCAGAATTTCGGTACATTGCAGGAGCTCATGGGAATGAAGTGCTGGGACGTGAGCTGATCCTTTTGTTAATGCAGTTCATGTGTCAGGAATACCTCGCTGGGAACCCACGCATTGTGCATCTCATCGAGGATACCAGGATCCACCTTCTTCCCTCAGTCAACCCAGATGGATACGACAAGGCATACAAAGCG
Seq A exon
GGCTCAGAATTAGGGGGCTGGTCTTTAGGTCGATGGACTCAGGATGGCATTGACATCAACAATAATTTCCCTGATTTAAACTCTTTGCTCTGGGAGTCTGAAGATCAGAAGAAGAGCAAAAGGAAAGTTCCAAACCATCACATCCCCATTCCTGACTGGTACCTGTCTGAAAATGCCACC
Seq C2 exon
GTGGCAGTGGAGACGCGAGCAATCATTGCATGGATGGAAAAAATTCCTTTTGTGCTGGGGGGCAATCTGCAGGGAGGAGAGCTGGTCGTGGCGTACCCCTATGACATGGTGCGGTCCCTGTGGAAAACGCAGGACTACACGCCCACACCAGATGACCATGTCTTTCGCTGGCTTGCCTACTCCTACGCCTCCACACACCGGCTGATGACAGACGCGAGGAGGAGAGCGTGTCACACAGAGGACTTCCAGAAGGAGGATGGCACAGTTAATGGCGCCTCTTGGCACACCGTGGCTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009693-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.050 C2=0.040
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(21.0=100)
A:
PF0024619=Peptidase_M14=FE(19.1=100)
C2:
PF0024619=Peptidase_M14=FE(32.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGGAATACCTCGCTGGGA
R:
CGTGTAGTCCTGCGTTTTCCA
Band lengths:
251-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]