BtaEX6103254 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009736 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:29829]
Coordinates
chr29:43691359-43692236:-
Coord C1 exon
chr29:43692143-43692236
Coord A exon
chr29:43691729-43691929
Coord C2 exon
chr29:43691359-43691604
Length
201 bp
Sequences
Splice sites
3' ss Seq
CTCTGTGGTGCCACCCACAGGTG
3' ss Score
9.86
5' ss Seq
GAGGTCTGG
5' ss Score
2.59
Exon sequences
Seq C1 exon
GGATGTCAAGCCAGACAATATCCTGCTGGACATGAACGGGCACATCCGCTTGGCCGACTTTGGCTCCTGCCTACGTCTCAACAACAGTGGCATG
Seq A exon
GTGGACTCATCGGTGGCGGTGGGGACACCCGACTACATCTCCCCTGAGATCCTGCAGGCCATGGAGGAGGGCAAGGGCCACTACGGCCCACAGTGCGACTGGTGGTCCCTGGGGGTCTGTGCCTATGAGCTGCTCTTCGGGGAGACGCCCTTCTATGCTGAATCTCTGGTGGAAACCTACGGCAAGATCATGAACCACGAG
Seq C2 exon
GACCACCTGCAGTTCCCCGACGTGCCCGACGTGCCAGCCAGCGCCCAAGACCTGATCCGCCAGCTGCTGTGCCGCCAGGAGGAGCGTCTGGGCCGCAGAGGGCTGGACGACTTCCGGAACCACCCCTTCTTTGAAGGCGTGGACTGGGAGAGGCTGGCGACCAGCACTGCCCCCTACATCCCCGAGCTGCGCGGGCCCATGGACACCTCCAACTTCGATGTGGACGACGACACCCTCAACCATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009736-'7-10,'7-8,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.280
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(11.7=100)
A:
PF0006920=Pkinase=FE(24.8=100)
C2:
PF0006920=Pkinase=PD(16.2=52.4),PF0043319=Pkinase_C=PU(41.7=24.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACATGAACGGGCACATC
R:
CGTCCACATCGAAGTTGGAGG
Band lengths:
295-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]