RnoEX0019016 @ rn6
Exon Skipping
Gene
ENSRNOG00000027456 | Cdc42bpg
Description
CDC42 binding protein kinase gamma [Source:RGD Symbol;Acc:1307260]
Coordinates
chr1:221678237-221679010:+
Coord C1 exon
chr1:221678237-221678330
Coord A exon
chr1:221678467-221678667
Coord C2 exon
chr1:221678762-221679010
Length
201 bp
Sequences
Splice sites
3' ss Seq
CACCAACACCCCTGACCCAGGTG
3' ss Score
3.62
5' ss Seq
GAGGTCTGA
5' ss Score
2.68
Exon sequences
Seq C1 exon
GGATGTCAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG
Seq A exon
GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCCCTGGGAGTCTGCGCCTACGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAGTCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG
Seq C2 exon
GACCACCTCCAGTTCCCCTCTGATGTAGATGACGTGCCTGCTAGTGCCCAGGCCCTGATCCGGCAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGCGGTGGACTGGACGACTTCCGGAGCCACCCGTTCTTTGAAGGGGTTGATTGGGAGAGACTTGCAACCAGCACAGCACCCTACATCCCTGAGCTTCGCGGGCCGGTGGATACCTCCAACTTCGATGTGGATGATGATACCCTCAACCGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027456-'11-9,'11-8,12-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.229
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(11.6=100)
A:
PF0006920=Pkinase=FE(24.7=100)
C2:
PF0006920=Pkinase=PD(16.5=53.0),PF0043319=Pkinase_C=PU(41.7=24.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGCTGGACATGAATGGC
R:
CATCCACATCGAAGTTGGAGGT
Band lengths:
304-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]