BtaEX6103356 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010230 | CAPN1
Description
Bos taurus calpain 1, (mu/I) large subunit (CAPN1), mRNA. [Source:RefSeq mRNA;Acc:NM_174259]
Coordinates
chr29:44087877-44089195:+
Coord C1 exon
chr29:44087877-44087945
Coord A exon
chr29:44088188-44088266
Coord C2 exon
chr29:44089079-44089195
Length
79 bp
Sequences
Splice sites
3' ss Seq
CCCTCTGCCCCCCACCCCAGTCC
3' ss Score
8.82
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CGCGACGGCAATGGCAAACTGGGCCTGGTGGAGTTCAACATCCTATGGAACCGGATCCGGAATTACCTG
Seq A exon
TCCATCTTCCGGAAGTTTGACCTGGACAAGTCGGGCAGCATGAGTGCCTATGAAATGCGGATGGCCATTGAGTTTGCAG
Seq C2 exon
GCTTCAAGCTCAACAAGAAGCTGTACGAGCTCATTATCACCCGCTACTCGGAGCCCGACCTGGCCGTGGACTTCGACAACTTCGTGTGCTGCCTGGTGCGGCTGGAGACCATGTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010230-'24-26,'24-22,25-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PD(29.5=78.3),PF134991=EF-hand_7=PU(5.5=21.7)
A:
PF134991=EF-hand_7=FE(28.6=100)
C2:
PF134991=EF-hand_7=FE(42.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTGGGCCTGGTGGAGTTC
R:
GAACATGGTCTCCAGCCGC
Band lengths:
170-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]