DreEX0002303 @ danRer10
Exon Skipping
Gene
ENSDARG00000045199 | CAPN1 (1 of 2)
Description
calpain 1, (mu/I) large subunit [Source:HGNC Symbol;Acc:HGNC:1476]
Coordinates
chr7:6552212-6554924:-
Coord C1 exon
chr7:6554856-6554924
Coord A exon
chr7:6553437-6553515
Coord C2 exon
chr7:6552212-6552328
Length
79 bp
Sequences
Splice sites
3' ss Seq
TTCCGCTCGTGTGTTTCCAGCAA
3' ss Score
7.73
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
ACGGATGGCAGTGGGAAACTCGGACTCGTAGAGTTTCATGTGTTGTGGGAGAAGATTAAACGCTACCTG
Seq A exon
CAAATCTTCCGCGATCACGATGTGGATAAATCAGGCACTATGAGCTCGTATGAGATGAGGAAAGCTCTGGAAACTGCAG
Seq C2 exon
GATTTAAGCTGAACAATCATTTATTCCAGCTGATCATCCTGCGCTACACTGAGGAGGATCTTTCCGTGGATTTTGACAACTTTGTGTCCTGTTTAGTGCGACTGGAGACCATGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045199-'23-22,'23-21,24-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PD(29.5=78.3),PF134991=EF-hand_7=PU(5.5=21.7)
A:
PF134991=EF-hand_7=FE(28.6=100)
C2:
PF134991=EF-hand_7=FE(42.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGGAAACTCGGACTCGTA
R:
ACATGGTCTCCAGTCGCACTA
Band lengths:
174-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]