GgaEX0015164 @ galGal4
Exon Skipping
Gene
ENSGALG00000010186 | CAPN1
Description
Calpain-1 catalytic subunit [Source:UniProtKB/Swiss-Prot;Acc:P00789]
Coordinates
chr3:29682031-29682841:-
Coord C1 exon
chr3:29682773-29682841
Coord A exon
chr3:29682590-29682668
Coord C2 exon
chr3:29682031-29682147
Length
79 bp
Sequences
Splice sites
3' ss Seq
CTCTGTGATGGCTTTTGCAGACA
3' ss Score
7.99
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AAAGATGGCAGTGCCCGCCTGGGGCTGGTGGAGTTCCAGATCCTATGGAACAAGATCCGCAGCTGGCTG
Seq A exon
ACAATCTTCCGCCAGTATGACCTGGATAAATCAGGCACCATGAGCTCATACGAGATGCGCATGGCTCTAGAGTCAGCTG
Seq C2 exon
GTTTCAAGCTGAATAACAAGCTGCATCAGGTGGTGGTTGCCCGTTACGCAGATGCTGAGACGGGCGTGGACTTCGACAACTTTGTCTGCTGCCTGGTGAAGCTGGAGACAATGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010186_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PD(29.5=78.3),PF0003627=EF-hand_1=PU(3.6=4.3)
A:
PF0003627=EF-hand_1=PD(89.3=92.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGGCTGGTGGAGTT
R:
AACATTGTCTCCAGCTTCACCA
Band lengths:
167-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]