RnoEX0016675 @ rn6
Exon Skipping
Gene
ENSRNOG00000026025 | Capn11
Description
calpain 11 [Source:RGD Symbol;Acc:1302946]
Coordinates
chr9:17747705-17748613:+
Coord C1 exon
chr9:17747705-17747773
Coord A exon
chr9:17748339-17748417
Coord C2 exon
chr9:17748497-17748613
Length
79 bp
Sequences
Splice sites
3' ss Seq
TGACGCCTATTTGCCTTCAGGAA
3' ss Score
10.08
5' ss Seq
CAGGTGGCC
5' ss Score
3.48
Exon sequences
Seq C1 exon
AAAGACGATTCTGGAAAGCTGGGGCTTCATGAGTTCCATATCCTATGGAAAAAGATCAAGAAATGGATG
Seq A exon
GAAATCTTCAAAGAGTGTGATCAAGACCGCTCAGGGAACTTGAACTCCTACGAGATGCGCTTGGCAATAGAGAAAGCAG
Seq C2 exon
GCATCAGAATGAACAACAGGGTGACTGAGGTGGTCGTTGCTAGATATGCAGATGCCAACATGATCGTGGATTTTGACAACTTCATCAACTGTTTCCTAAGGCTCAAGGCCATGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026025_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PD(30.0=78.3),PF0003627=EF-hand_1=PU(6.9=8.7)
A:
PF0003627=EF-hand_1=PD(86.2=92.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGATTCTGGAAAGCTGGGG
R:
GCCTTGAGCCTTAGGAAACAGT
Band lengths:
175-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]