DreEX0018795 @ danRer10
Exon Skipping
Gene
ENSDARG00000052702 | capn1a
Description
calpain 1, (mu/I) large subunit a [Source:ZFIN;Acc:ZDB-GENE-040426-1263]
Coordinates
chr13:42558001-42560389:-
Coord C1 exon
chr13:42560321-42560389
Coord A exon
chr13:42558643-42558721
Coord C2 exon
chr13:42558001-42558114
Length
79 bp
Sequences
Splice sites
3' ss Seq
CTATTTTCTTTTCCACTCAGGGG
3' ss Score
9.13
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AAAGATGGGAGCGCACGTTTGGGCTTAGTCGAGTTTCAGATCCTCTGGAACAAAATAAGGAAGTTGCTG
Seq A exon
GGGATCTTCAGAGAGTTTGATATTGATAAGTCAGGAACTATGAGCTCTTATGAGATGCGTCTCGCTGTAGAATCAGCAG
Seq C2 exon
GCTTTAAACTCAATAACAGACTCAACCAGATCCTGGTAGCCAGATATGCAGAGAACGAGGCCATTGATTTTGATAACTTCGTCTGCTGCTTGATCAAACTAGAGGCCATGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052702-'24-26,'24-25,25-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PD(29.5=78.3),PF0003627=EF-hand_1=PU(6.9=8.7)
A:
PF0003627=EF-hand_1=PD(86.2=92.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGATGGGAGCGCACGTTTG
R:
AGTTTGATCAAGCAGCAGACGA
Band lengths:
169-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]