BtaEX6097862 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021066 | CAPN11
Description
calpain 11 [Source:HGNC Symbol;Acc:HGNC:1478]
Coordinates
chr23:17818455-17819384:+
Coord C1 exon
chr23:17818455-17818523
Coord A exon
chr23:17819094-17819172
Coord C2 exon
chr23:17819268-17819384
Length
79 bp
Sequences
Splice sites
3' ss Seq
ACAACTGCCTGTCCCTTCAGGAC
3' ss Score
11.08
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
AAAGATGGCTCTGGCAAACTGGGGCTTCGGGAGTTTCAGGTCCTGTGGAGAAAAATCAAGAAATGGACG
Seq A exon
GACATCTTCCGAGAGTGTGACCAGGACCAGTCAGGCACCTTGAATTCCTATGAGATGCGCTTGGCAGTTGAGAAAGCAG
Seq C2 exon
GCATCAAGCTGAACAACAAGGTCACGCAGGTGCTGGTGGCCAGGTACGCGAATGACAGCTTGATCATGGAGTTTGACAGCTTCATCAGCTGTTTCCTGAGGCTGAAGGCCATGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021066-'21-23,'21-22,22-23=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PD(29.5=78.3),PF134991=EF-hand_7=PU(5.6=21.7)
A:
PF134991=EF-hand_7=FE(28.9=100)
C2:
PF134991=EF-hand_7=FE(43.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATGGCTCTGGCAAACTGG
R:
CCTTCAGCCTCAGGAAACAGC
Band lengths:
176-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]