MmuEX6077896 @ mm9
Exon Skipping
Gene
ENSMUSG00000058626 | Capn11
Description
calpain 11 [Source:MGI Symbol;Acc:MGI:1352490]
Coordinates
chr17:45768737-45769398:-
Coord C1 exon
chr17:45769330-45769398
Coord A exon
chr17:45768958-45769036
Coord C2 exon
chr17:45768737-45768850
Length
79 bp
Sequences
Splice sites
3' ss Seq
ACGTCTCTGTCTGTCTTCAGGAA
3' ss Score
12.33
5' ss Seq
CAGGTGGCG
5' ss Score
2.99
Exon sequences
Seq C1 exon
AAAGATGGTTCTGGCAAGCTGGAGCTTCATGAATTCCAGGTCCTGTGGAAAAAGATCAAGAAATGGACG
Seq A exon
GAAATCTTCAAAGAGTGTGATGAGGACCGCTCAGGGAACTTGAACTCCTATGAGATGCGCCTGGCAATAGAGAAAGCAG
Seq C2 exon
GCATCAAGATGAACAACAGAGTGACCGAGGTAGTCGTTGCCAGGTACTCGGATAACATGATTGTGGACTTTGACAGCTTCCTCAACTGTTTCCTGAGGCTCAAGGCCATGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058626-'19-22,'19-21,20-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PD(29.5=78.3),PF0175117=Toprim=FE(21.0=100),PF0003627=EF-hand_1=PU(6.9=8.7)
A:
PF0175117=Toprim=FE(24.8=100),PF0003627=EF-hand_1=PD(86.2=92.6)
C2:
PF0175117=Toprim=PD(13.3=35.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATGGTTCTGGCAAGCTGG
R:
GCCTTGAGCCTCAGGAAACAG
Band lengths:
174-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: