DreEX6099406 @ danRer10
Exon Skipping
Gene
ENSDARG00000052748 | capn1b
Description
calpain 1, (mu/I) large subunit b [Source:ZFIN;Acc:ZDB-GENE-060503-491]
Coordinates
chr22:26279295-26281432:-
Coord C1 exon
chr22:26281364-26281432
Coord A exon
chr22:26281201-26281279
Coord C2 exon
chr22:26279295-26279408
Length
79 bp
Sequences
Splice sites
3' ss Seq
TCATCTGTCTTCATCTGCAGGGT
3' ss Score
12.01
5' ss Seq
CAGGTGATC
5' ss Score
4.28
Exon sequences
Seq C1 exon
AAAGACGGCAGTGCACGACTGGGAATTGTGGAGTTCCAGATTCTGTGGAATAAAATCAGGAAGTGGCTG
Seq A exon
GGTGTCTTCAGACAGTTCGATCTGGATAAATCTGGAACTATGAGCTCCTACGAAATGCGCCTGGCTGTGGAGTCTGCAG
Seq C2 exon
GTTTTAAACTCAATAACAAGCTACATCAGATCCTGGTGGCCCGATATTCAGACGGAGATGTGATTGACTTCGACAACTTTGTCTGCTGCCTGGTTAAACTGGAGGCCATGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052748-'19-20,'19-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PD(29.5=78.3),PF0003627=EF-hand_1=PU(6.9=8.7)
A:
PF0003627=EF-hand_1=PD(86.2=92.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCACGACTGGGAATTGTG
R:
ATGGCCTCCAGTTTAACCAGG
Band lengths:
169-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]