BtaEX6104012 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005903 | LRP5
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N1K8]
Coordinates
chr29:46501389-46521524:+
Coord C1 exon
chr29:46501389-46501585
Coord A exon
chr29:46502647-46502778
Coord C2 exon
chr29:46521128-46521524
Length
132 bp
Sequences
Splice sites
3' ss Seq
CCCCGCCCCGTTTCCCGCAGACC
3' ss Score
12.12
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCAGAAGGTCGTGGAGGGCAGTCTGACGCACCCCTTTGCCCTGACGCTCTCTGGAGACACTCTGTACTGGACAGACTGGCAGACCCGCTCCATCCACGCCTGTAACAAGAGGACTGGAGACAAGAGGAAGGAGATCCTTAGCGCTCTCTACTCGCCCATGGATATTCAAGTGCTCAGCCCGGAGCGACAGCCTTATT
Seq A exon
ACCACACGCGGTGTGAGGAGGACAACGGCGGCTGCTCCCATCTGTGCCTGCTGTCCCCGCGGGAGCCCTTCTACGCCTGCGCCTGCCCCACGGGCGTGCAGCTTCAGGACAACGGCCAGACGTGCAAGGCAG
Seq C2 exon
GGGCAGAGGAGGTGCTGCTGCTGGCCCGGCGGACGGACCTGCGGAGGATCTCGCTGGACACGCCGGACTTCACGGACATCGTGCTGCAGGTGGACGACATCCGGCACGCCATCGCCATTGACTACGACCCGCTGGAGGGCTACGTCTACTGGACGGACGACGAGGTGCGGGCCATCCGCAGGGCATACCTGGACGGGTCGGGGGCACAGACGCTGGTCAACACCGAGATCAACGACCCTGACGGCATCGCGGTCGACTGGGTGGCCCGCAACCTCTATTGGACTGACACCGGCACCGACCGCATCGAGGTGACGCGCCTCAATGGCACCTCCCGCAAGATCCTGGTGTCCGAGGACCTGGACGAGCCCCGTGCCATCGTGCTGCACCCCGTGATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005903-'4-8,'4-6,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(41.0=23.9)
A:
PF146701=FXa_inhibition=WD(100=84.4)
C2:
PF0005812=Ldl_recept_b=WD(100=30.8),PF0005812=Ldl_recept_b=WD(100=30.8),PF0005812=Ldl_recept_b=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGCCTGTAACAAGAGGAC
R:
GTCCAGTAGACGTAGCCCTCC
Band lengths:
258-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]