DreEX0043758 @ danRer10
Exon Skipping
Gene
ENSDARG00000006921 | lrp5
Description
low density lipoprotein receptor-related protein 5 [Source:ZFIN;Acc:ZDB-GENE-050518-2]
Coordinates
chr25:10612255-10622300:-
Coord C1 exon
chr25:10622104-10622300
Coord A exon
chr25:10614791-10614922
Coord C2 exon
chr25:10612255-10612651
Length
132 bp
Sequences
Splice sites
3' ss Seq
CCTTGTCATTTTCTCCACAGTTC
3' ss Score
10.64
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GGAGGCTGTGGTGGAGGGTTCCCTCACCCACCCGTTCGCCCTCACCCTTTACGACGAAACGCTCTACTGGACCGACTGGCAGACCCGATCCATCCACGCCTGCAACAAACACAGCGGAGAGAAGCACAGGGAAATTCTCAACGGCATTTACTCGCCGATGGACATCCAGGTGCTTGGCCAAGAGCGCCAGCCCAACA
Seq A exon
TTCAAACTCCATGCAGTGAAAGGAACGGAGGCTGTTCCCACCTGTGTCTTCTCTCCCCCATTCCTCCCTTTTACAGCTGCGCTTGTCCAACAGGGGTTAAGCTCAAAGAGGACGGAAAGACTTGTCGGCCAG
Seq C2 exon
GAGCAGAACAGGTGCTTTTACTTGCTCGTCGCACTGATCTTCGGCGGATATCCTTGGACTTGCCTGACTTTACAGATATCGTCCTTCAAGTCAATGATATTCGTCATGCAATTGCCATCGATTATGACCCGGTGGAGGGATATGTCTACTGGACGGACGATGAGTTGAGGGCTATACGGCGTGCTCGAATTGATGGAAGCGATGCCCAGACTTTAATCACCAATGAGATCAATCATCCTGATGGAATTGCTGTGGATTGGGTGGCACGAAACCTCTACTGGACGGACACTGGCACAGATCGCATTGAGGTGACCAGACTCAATGGCACTTCTCGACGGGTCCTCATATCTGAGAACCTGGACGAACCACGAGCCATTGTATTGGATCCCATAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006921-'5-8,'5-7,6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.089 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(42.5=25.4)
A:
PF146701=FXa_inhibition=WD(100=84.4)
C2:
PF0005812=Ldl_recept_b=WD(100=30.8),PF0005812=Ldl_recept_b=WD(100=30.8),PF0005812=Ldl_recept_b=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAACGGCATTTACTCGCC
R:
AATTCGAGCACGCCGTATAGC
Band lengths:
253-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]