RnoEX6005903 @ rn6
Exon Skipping
Gene
ENSRNOG00000015911 | Lrp5
Description
LDL receptor related protein 5 [Source:RGD Symbol;Acc:1309329]
Coordinates
chr1:218865769-218880815:-
Coord C1 exon
chr1:218880619-218880815
Coord A exon
chr1:218878878-218879009
Coord C2 exon
chr1:218865769-218866165
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCCTGTTCCCACCAGTCC
3' ss Score
8.74
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCAGAAGGTGGTGGAGGGCAGCCTCACTCACCCCTTTGCCCTGACACTCTCTGGGGACACACTCTACTGGACAGACTGGCAGACCCGTTCTATCCACGCCTGCAACAAGTGGACAGGGGAGAAAAGGAAGGAGATCCTCAGTGCTCTGTATTCACCCATGGACATTCAGGTGCTGAGCCAGGAGCGGCAGCCTCACT
Seq A exon
TCCACACGCCATGTGAGGAAGGCAACGGCGGCTGCTCCCACCTGTGCCTGCTGTCCCCGAGGGAGCCCTTCTACTCCTGCGCCTGCCCTACTGGTGTACAGTTGCAGGACAATGGCAAGACGTGTAAGGCAG
Seq C2 exon
GGGCTGAGGAAGTGCTGCTGCTGGCCCGGAGGACAGACCTGAGAAGGATCTCTCTGGACACCCCTGACTTCACAGACATAGTGCTGCAAGTGGGCGACATTCGGCATGCCATCGCCATCGACTATGACCCACTGGAGGGCTACGTGTACTGGACAGATGACGAGGTGCGGGCTATCCGCAGGGCGTACCTGGATGGCTCAGGTGCGCAGACCCTTGTGAACACCGAGATCAATGATCCCGATGGCATTGCCGTGGACTGGGTCGCCCGGAACCTCTACTGGACAGATACAGGCACTGACAGAATTGAGGTGACTCGCCTCAACGGCACCTCCCGAAAGATCCTGGTGTCCGAGGACCTGGACGAACCTCGAGCCATTGTGTTGCACCCTGTGATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015911-'9-7,'9-6,12-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.044 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(41.0=23.9)
A:
PF146701=FXa_inhibition=WD(100=84.4)
C2:
PF0005812=Ldl_recept_b=WD(100=30.8),PF0005812=Ldl_recept_b=WD(100=30.8),PF0005812=Ldl_recept_b=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATCCACGCCTGCAACAAGT
R:
AGTACACGTAGCCCTCCAGTG
Band lengths:
258-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]