GgaEX1033964 @ galGal3
Exon Skipping
Gene
ENSGALG00000006998 | Q5ZKF9_CHICK
Description
NA
Coordinates
chr5:17616939-17640078:+
Coord C1 exon
chr5:17616939-17617135
Coord A exon
chr5:17619108-17619239
Coord C2 exon
chr5:17639682-17640078
Length
132 bp
Sequences
Splice sites
3' ss Seq
GATTGTTTGGTTTCTTGAAGTTC
3' ss Score
4.6
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCAAAAGGTTGTTGAAGGAAGTCTTACTCATCCATTTGCATTGACGTTGTCTGGGGACACTTTGTATTGGACGGACTGGCAGACACGTTCCATTCATGCCTGTAACAAACGGACAGGAGAGAAGAGGAGAGAAATATTATCTGCTTTGTATTCTCCCATGGACATCCAAGTCTTAAGTCCAGACCGGCAGCCCTACT
Seq A exon
TTCACACTCCCTGTGAAGAAAACAATGGTGGTTGCTCCCATCTGTGCCTGCTATCACCAAGAGACCCCTTCTATAGCTGTGCCTGTCCCACTGGTGTGCAGCTGGAAGATGATGGCAGGACGTGCAAATCAG
Seq C2 exon
GTGCTGAAGAAGTGTTGCTGCTTGCTAGGAGGACTGACTTGAGAAGGATTTCCTTGGACATGCCAGATTTCACTGACATTATTCTGCAGATAGACAATATCAGGCATGCAATTGCCATAGACTATGATCCTGTGGAAGGCTACATCTACTGGACTGATGATGATGTTCGGGCAATTCGTCGGGCGTACCTTGATGGCTCTGGAGCACAGACTCTGGTAACCACAGAAATCAACCATCCAGATGGTATTGCTGTGGACTGGGTGGCAAGGAACCTGTACTGGACTGATACTGGAACAGACCGCATTGAAGTGACCCGTTTGAATGGAACATCAAGAAAGATCCTTATATCAGAAAATCTGGATGAACCTCGTGCAATTGTGCTCAATCCTGTGATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006998-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(41.0=23.9),PF0005812=Ldl_recept_b=WD(100=55.2)
A:
PF146701=FXa_inhibition=WD(100=84.4)
C2:
PF0005812=Ldl_recept_b=WD(100=30.8),PF0005812=Ldl_recept_b=WD(100=30.8),PF0005812=Ldl_recept_b=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTTAAGTCCAGACCGGCA
R:
GGTTACCAGAGTCTGTGCTCC
Band lengths:
250-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]