BtaEX6105056 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013592 | ZNF248
Description
zinc finger protein 248 [Source:HGNC Symbol;Acc:HGNC:13041]
Coordinates
chr28:13225652-13239268:+
Coord C1 exon
chr28:13225652-13225693
Coord A exon
chr28:13238767-13238893
Coord C2 exon
chr28:13239173-13239268
Length
127 bp
Sequences
Splice sites
3' ss Seq
AAAGGAATGTACTGTTACAGGAG
3' ss Score
3.01
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
CTCTCCCTCCTCCACTAAGAGTGAAAAATGAACAAATCCCAG
Seq A exon
GAGCAAGTGTCATTCAAAGATGTATGTGTGGACTTCACCCAGGAAGAGTGGTACCTGCTGGATCCTGCTCAGAAGATATTATACAGAGACGTGATCCTTGAAAATTATAGCCACCTTGTCTCAGTAG
Seq C2 exon
GGAATTGCATTACTAAGCCAGAAGTGATCTTCAAGATCGAGCAAGGAGAAGAACCTTGGATACTAGAGGAAAGATTCCCAAAACAGTGGCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013592-'5-9,'5-7,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
ENSBTAT00000025240fB7981
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCCTCCTCCACTAAGAGT
R:
CTGAGTGCCACTGTTTTGGGA
Band lengths:
138-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]