MmuEX6006474 @ mm10
Exon Skipping
Gene
ENSMUSG00000030145 | Zfp248
Description
zinc finger protein 248 [Source:MGI Symbol;Acc:MGI:1919970]
Coordinates
chr6:118432857-118453887:-
Coord C1 exon
chr6:118453846-118453887
Coord A exon
chr6:118433305-118433431
Coord C2 exon
chr6:118432857-118432946
Length
127 bp
Sequences
Splice sites
3' ss Seq
AAAAGGATGTTTTGTTCCAGGAG
3' ss Score
5.3
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
CTTTCCCTCCTCCACTCAGAGCAGAAAATGAACAAATCCCAG
Seq A exon
GAGCAAGTGTCGTTCAAGGATGTATGCGTGGATTTCACCAAGGAAGAGTGGTATTTGCTGGACCCTGCCCAGAAGGTGCTTTACAGAGATGTGATCCTGGAGAATTATAGCAACTTCGTCTCCGTAG
Seq C2 exon
GGCATTGTGTTACTAAGCCAGATGTAATCTTCAAGATAGAGCAAGGAGAAGATCCCTGGATACCAGAAAATGGATTCCAGTGCCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030145-'5-10,'5-9,14-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.013 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCCTCCTCCACTCAGAGC
R:
TGGGTGGCACTGGAATCCATT
Band lengths:
130-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types