BtaEX6105143 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019052 | ANK3
Description
Bos taurus ankyrin 3, node of Ranvier (ankyrin G) (ANK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001105620]
Coordinates
chr28:15960997-15973689:-
Coord C1 exon
chr28:15973492-15973689
Coord A exon
chr28:15967605-15967703
Coord C2 exon
chr28:15960997-15961095
Length
99 bp
Sequences
Splice sites
3' ss Seq
ACCACTTTGGTATTTTGCAGAGT
3' ss Score
9.19
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
AATGGTTATACGCCACTGCACATCGCTGCCAAAAAGAACCAGATGGACATAGCGACGACTCTGCTGGAATATGGTGCTGATGCAAATGCAGTTACCCGGCAAGGAATTGCTTCTGTCCATCTTGCAGCTCAGGAAGGACATGTGGACATGGTGTCACTGCTCCTCAGCAGAAATGCTAATGTGAACTTGAGCAATAAG
Seq A exon
AGTGGCCTGGCCCCACTCCATTTGGCTGCGCAAGAAGACAGAGTGAATGTGGCCGAAGTCCTTGTAAACCAGGGGGCACATGTGGACGCCCAGACAAAG
Seq C2 exon
ATGGGATACACACCGCTACATGTAGGCTGCCACTATGGAAACATCAAGATTGTTAACTTCCTGCTCCAGCATTCTGCAAAAGTAAATGCCAAAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019052-'18-22,'18-21,19-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=47.0),PF127962=Ank_2=PU(29.0=40.9)
A:
PF127962=Ank_2=FE(34.4=100)
C2:
PF127962=Ank_2=PD(33.3=93.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATAGCGACGACTCTGCTG
R:
CAGCCTACATGTAGCGGTGTG
Band lengths:
182-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]