GgaEX6039834 @ galGal3
Exon Skipping
Gene
ENSGALG00000003135 | Q90717_CHICK
Description
NA
Coordinates
chr6:10081128-10095485:+
Coord C1 exon
chr6:10081128-10081325
Coord A exon
chr6:10083280-10083378
Coord C2 exon
chr6:10095387-10095485
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTGCTGCTCCTCATTTACAGAGT
3' ss Score
9.17
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
AACGGCTATACACCACTACACATAGCTGCCAAGAAAAACCAGATGGACATAGCGACTACACTGCTGGAATATGGTGCTGATGCCAATGCTGTAACCAGACAGGGTATTGCCCCTGTACATCTGGCCTCTCAGGACGGCCACGTGGACATGGTGTCCTTACTTCTTACTAGAAATGCTAATGTAAATCTCAGCAACAAG
Seq A exon
AGTGGACTGACACCATTGCACTTGGCTGCTCAAGAGGACAGAGTCAATGTAGCAGAGGTTCTTGTTAACCAAGGAGCTGCTGTTGATGCTCAGACAAAG
Seq C2 exon
ATGGGATATACTCCCTTGCACGTTGGCTGCCACTACGGAAACATAAAGATTGTTAACTTCCTTCTGCAACATTCTGCAAAAATCAATGCCAAAACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135-'18-20,'18-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.030 C2=0.030
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=47.0),PF127962=Ank_2=PU(29.0=40.9)
A:
PF127962=Ank_2=PU(29.0=81.8)
C2:
PF127962=Ank_2=PD(33.3=93.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCTGATGCCAATGCTGTA
R:
TATGTTTCCGTAGTGGCAGCC
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]