GgaEX6039834 @ galGal4
Exon Skipping
Gene
ENSGALG00000003135 | chAnk3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:RefSeq peptide;Acc:NP_001264026]
Coordinates
chr6:8420218-8434575:+
Coord C1 exon
chr6:8420218-8420415
Coord A exon
chr6:8422370-8422468
Coord C2 exon
chr6:8434477-8434575
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTGCTGCTCCTCATTTACAGAGT
3' ss Score
9.17
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
AACGGCTATACACCACTACACATAGCTGCCAAGAAAAACCAGATGGACATAGCGACTACACTGCTGGAATATGGTGCTGATGCCAATGCTGTAACCAGACAGGGTATTGCCCCTGTACATCTGGCCTCTCAGGACGGCCACGTGGACATGGTGTCCTTACTTCTTACTAGAAATGCTAATGTAAATCTCAGCAACAAG
Seq A exon
AGTGGACTGACACCATTGCACTTGGCTGCTCAAGAGGACAGAGTCAATGTAGCAGAGGTTCTTGTTAACCAAGGAGCTGCTGTTGATGCTCAGACAAAG
Seq C2 exon
ATGGGATATACTCCCTTGCACGTTGGCTGCCACTACGGAAACATAAAGATTGTTAACTTCCTTCTGCAACATTCTGCAAAAATCAATGCCAAAACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135-'39-26,'39-24,40-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.030 C2=0.030
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=47.0),PF127962=Ank_2=PU(29.0=40.9)
A:
PF127962=Ank_2=PU(29.0=81.8)
C2:
PF127962=Ank_2=PD(33.3=93.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCTGATGCCAATGCTGTA
R:
TATGTTTCCGTAGTGGCAGCC
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]