BtaEX6105373 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000033398 | HKDC1
Description
hexokinase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23302]
Coordinates
chr28:25768823-25774767:+
Coord C1 exon
chr28:25768823-25768922
Coord A exon
chr28:25771112-25771295
Coord C2 exon
chr28:25774612-25774767
Length
184 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGCTCCCTCGTCCAGGTA
3' ss Score
11.28
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GACTTAGATGTGGACATCCTGGCTTTGGTCAACGACACCGTGGGGACCATGATGACGTGTGCCTATGACGATCCCTACTGCGAAGTTGGTGTCATCATTG
Seq A exon
GTACCGGCACCAACGCGTGCTACATGGAGGACATGAGCAACATCGACCTGGTGGAGGGCGACGAGGGGAGGATGTGCGTCAACACCGAGTGGGGAGCCTTCGGGGACGACGGGGCCCTGGAGGACATCCGCACCGAGTTTGACCGGGAGCTGGACCTCGGCTCTCTTAACCCCGGGAAGCAGCT
Seq C2 exon
GTTTGAAAAGATGATCAGCGGCCTATACTTGGGTGAACTCGTCAGGCTCATCTTGCTGAAGATGGCCAAGGCAGGCCTCCTGTTTGGCGGTGAGAAATCCTCTGCTCTTCACATTAAGGGCAAGATTGAAACACGGCATGTGGCTGCCATGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000033398-'5-7,'5-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.193 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
A:
PF0372711=Hexokinase_2=FE(25.4=100)
C2:
PF0372711=Hexokinase_2=FE(21.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCTGGCTTTGGTCAACGA
R:
CTCTCCATGGCAGCCACATG
Band lengths:
242-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]