DreEX6061144 @ danRer10
Exon Skipping
Gene
ENSDARG00000038703 | hkdc1
Description
hexokinase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9801]
Coordinates
chr13:22894361-22895055:-
Coord C1 exon
chr13:22894956-22895055
Coord A exon
chr13:22894651-22894834
Coord C2 exon
chr13:22894361-22894516
Length
184 bp
Sequences
Splice sites
3' ss Seq
GGTTCTGTCTGTTTCCTCAGGTA
3' ss Score
9.95
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GATCTTGATGTGGATGTCCTGGCGATGGTCAATGACACAGTGGGGGCCATGATGACCTGTGGATACGATGACCAGAACTGTGAAGTGGGGGTTATTGTAG
Seq A exon
GTACTGGCACCAATGCGTGTTACATGGAGGAAATGCGGCACATTGACCTGGTGGAGGGAGATGAAGGAAGAATGTGTATCAATACTGAATTGGGGGCATTTGGAGATGATGGTGTTCTTGATGATTTCATTACAAGCTTTGACCGTGAAATTGATGCCGCCTCTATTAATCCAGGAAAACAGCT
Seq C2 exon
TTTTGAAAAGATGGTGAGTGGGATGTACATGGGAGAACTTGTGAGACTTATCCTTCTAAGAATGGCCAAGAAGGGTCTACTCTTTCGTGGCCAAATCTCGGATGCTCTTCGAACCAAGGGAACATTTCATACCAACCATATGTGCTTGATTGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038703-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
A:
PF0372711=Hexokinase_2=FE(25.4=100)
C2:
PF0372711=Hexokinase_2=FE(21.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGATGTGGATGTCCTGGCG
R:
AGCACATATGGTTGGTATGAAATGT
Band lengths:
243-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]