MmuEX0022978 @ mm9
Exon Skipping
Gene
ENSMUSG00000020080 | Hkdc1
Description
hexokinase domain containing 1 [Source:MGI Symbol;Acc:MGI:2384910]
Coordinates
chr10:61866240-61871462:-
Coord C1 exon
chr10:61871363-61871462
Coord A exon
chr10:61868173-61868356
Coord C2 exon
chr10:61866240-61866395
Length
184 bp
Sequences
Splice sites
3' ss Seq
CTCTCCGGTCCGCTCTCTAGGAA
3' ss Score
10.49
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GACCTGGACGTGGACATCCTGGCTTTGGTTAACGACACTGTGGGGACCATGATGACTTGTGCTTATGATGATCCCAACTGTGAAGTCGGCGTTATCATCG
Seq A exon
GAACAGGCACCAACGCGTGTTACATGGAGGACATGAGCAACATCGACCTCGTGGAAGGGGACGAGGGAAGGATGTGTATCAACACGGAGTGGGGGGCCTTTGGGGACGATGGGGCTTTGGAGGACATCCGCACCGAGTTTGACAGAGAGCTGGACCTGGGCTCGCTCAACCCCGGGAAGCAGCT
Seq C2 exon
GTTCGAGAAGATGATCAGCGGGCTGTACATGGGGGAGCTGGTCAGGCTTATCTTGCTGAAGATGGCCAAAGTTGGTCTCCTGTTTGGGGGTGCAAAATCCTCTGCTCTCCATACAAAGGGCAAGATCGAAACACAGCACGTGGCTGCCATGGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020080_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
A:
PF0372711=Hexokinase_2=FE(25.4=100)
C2:
PF0372711=Hexokinase_2=FE(21.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGGACGTGGACATCCT
R:
CACGTGCTGTGTTTCGATCTTG
Band lengths:
242-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: