BtaEX6105379 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012380 | HK1
Description
Bos taurus hexokinase 1 (HK1), mRNA. [Source:RefSeq mRNA;Acc:NM_001012668]
Coordinates
chr28:25916764-25922576:+
Coord C1 exon
chr28:25916764-25916947
Coord A exon
chr28:25919018-25919173
Coord C2 exon
chr28:25922343-25922576
Length
156 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTCCTCTCATTCCAGGTA
3' ss Score
12.27
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GGACTGGCAGCAATGCCTGCTACATGGAGGAAATGAAAAACGTCGAGACGCTAGAAGGAAACCAGGGACAAATGTGTATCAACATGGAGTGGGGTGCCTTTGGGGACAACGGGTGTCTGGATGATATCAGAACAATCTATGACAAACTGGTGGATGAGTTTTCTCTAAACTCTGGGAAGCAAAG
Seq A exon
GTATGAGAAGATGATCAGCGGTATGTACCTGGGTGAGATTGTCCGCAACATCTTGATCGACTTCGCCAAGAGGGGCTTCCTCTTCCGGGGGCAGATCTCTGAGCCGCTGAAGACCCGGGGCCTCTTTCAGACCAAGTATCTCTCTCAGATCGAGAG
Seq C2 exon
CGACCGATTAGCGCTGCTGCAGGTCCGGGCCATCCTCCAGCAGCTGGGCCTGAACAGCACGTGCGACGACAGTATCCTCGTGAAGACCGTGTGTGGGGTGGTGTCCAAGAGGGCGGCGCAGCTGTGTGGCGCAGGCATGGCTGCTGTGGTGGATAAGATCCGCGAAAACAGGGGGCTGGACCGCCTCAACGTGACTGTGGGCGTGGACGGGACGCTCTACAAGCTTCATCCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012380-'25-19,'25-16,26-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(25.4=100)
A:
PF0372711=Hexokinase_2=FE(21.7=100)
C2:
PF0372711=Hexokinase_2=FE(32.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGAGTGGGGTGCCTTTG
R:
TTATCCACCACAGCAGCCATG
Band lengths:
258-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]