RnoEX0042006 @ rn6
Exon Skipping
Gene
ENSRNOG00000046891 | Hk1
Description
hexokinase 1 [Source:RGD Symbol;Acc:2796]
Coordinates
chr20:31914070-31917975:-
Coord C1 exon
chr20:31917792-31917975
Coord A exon
chr20:31916642-31916797
Coord C2 exon
chr20:31914070-31914303
Length
156 bp
Sequences
Splice sites
3' ss Seq
CTCCCTTCCTCTCGACTCAGGTT
3' ss Score
9.87
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGACGGGCACCAATGCCTGCTACATGGAGGAGATGAAGAATGTGGAGATGGTGGAGGGGAACCAGGGCCAGATGTGCATCAACATGGAGTGGGGCGCCTTCGGTGACAATGGGTGTCTGGATGACATCAGAACAGACTTTGACAAAGTGGTGGACGAATATTCTCTAAACTCTGGGAAACAAAG
Seq A exon
GTTTGAGAAAATGATCAGTGGGATGTACCTGGGTGAGATCGTCCGTAACATCCTGATTGACTTCACCAAGAAAGGCTTCCTCTTCCGGGGACAGATCTCCGAACCACTCAAGACCCGAGGCATCTTTGAGACCAAGTTTCTCTCTCAGATTGAGAG
Seq C2 exon
TGACCGGTTAGCGCTGCTCCAGGTGCGGGCCATCCTTCAGCAGCTGGGTTTGAACAGCACGTGTGACGACAGTATCCTGGTCAAGACCGTGTGTGGGGTGGTGTCCAAGAGGGCGGCTCAGCTGTGTGGTGCCGGCATGGCCGCCGTGGTGGAAAAGATCAGAGAGAACAGAGGCCTAGACCATCTGAATGTAACTGTGGGAGTGGATGGGACGCTCTACAAACTTCATCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046891-'40-37,'40-36,42-37
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(25.4=100)
A:
PF0372711=Hexokinase_2=FE(21.7=100)
C2:
PF0372711=Hexokinase_2=FE(32.5=100)
Main Skipping Isoform:
ENSRNOT00000072429fB6542
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAATGCCTGCTACATGGA
R:
TCGTCACACGTGCTGTTCAAA
Band lengths:
246-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]