GgaEX1028744 @ galGal4
Exon Skipping
Gene
ENSGALG00000004222 | HK1
Description
hexokinase-1 [Source:RefSeq peptide;Acc:NP_989432]
Coordinates
chr6:10490844-10493788:+
Coord C1 exon
chr6:10490844-10491027
Coord A exon
chr6:10492739-10492894
Coord C2 exon
chr6:10493555-10493788
Length
156 bp
Sequences
Splice sites
3' ss Seq
GCTGCTGTCTTTCCTTGCAGGTA
3' ss Score
12.85
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GAACTGGCAGCAATGCCTGTTACATGGAGGAGATGAGAAACATAGAGATGGTGGATGGTGAGCAAGGACGGATGTGTGTGAACATGGAGTGGGGAGCTTTCGGGGATAATGGATGCCTGGACGATATCAGGACAATATATGACAAAGCAGTTGATGACTATTCACTAAATGCTGGAAAGCAAAG
Seq A exon
GTATGAGAAGATGATCAGTGGGATGTACCTGGGGGAAATAGTCCGCAATATTTTGATTGACTTCACCAAACGAGGGTTCCTGTTCAGAGGACAGATCTCAGAGACTCTGAAAACCAGGCATATCTTTGAAACCAAGTTCCTTTCACAGATTGAGAG
Seq C2 exon
CGACAGGTTAGCCTTGCTTCAGGTGCGAACCATTCTCCAGCAGCTGGGGCTCAACAGCACGTGCGATGACAGTATCATTGTCAAGACAGTGTGCGGAGCGGTGTCAAAGCGAGCAGCTCAGTTATGTGGTGCCGGAATGGCTGCCGTTGTAGATAAAATTAGGGAGAACAGAGGCTTAGAGCACCTGGAGATAACGGTTGGTGTGGATGGGACTCTGTACAAACTACACCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004222-'29-26,'29-25,33-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(25.4=100)
A:
PF0372711=Hexokinase_2=FE(21.7=100)
C2:
PF0372711=Hexokinase_2=FE(32.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGGACGGATGTGTGTGAA
R:
GCACCACATAACTGAGCTGCT
Band lengths:
255-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]