DreEX6061137 @ danRer10
Exon Skipping
Gene
ENSDARG00000039452 | hk1
Description
hexokinase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2848]
Coordinates
chr13:22845546-22846975:-
Coord C1 exon
chr13:22846792-22846975
Coord A exon
chr13:22845883-22846038
Coord C2 exon
chr13:22845546-22845779
Length
156 bp
Sequences
Splice sites
3' ss Seq
GTCTGTATTTCCACTTTAAGGTA
3' ss Score
9.29
5' ss Seq
GAGGTATTG
5' ss Score
7.44
Exon sequences
Seq C1 exon
GAACGGGCAGCAATGCCTGCTACATGGAGGAAATGCGAAACATCGAGACAGTAAGTGGAGAGGAGGGCAGGATGTGTGTGAATATGGAGTGGGGAGCATTTGGAGATAATGGCTGTCTGGATGACATCCGGACGAAGTATGACGATGCTGTGGATGACCTCTCCCTCAATGCCGGCAAACAAAA
Seq A exon
GTATGAGAAGATGTGCAGTGGCATGTACCTGGGTGAGATTGTTCGAAACATCTTGATCGACTTGACGAAGCGAGGCTTCCTCTTCAGGGGACAGATCTCTGAAACACTGAAGACCAGAGGCATCTTCGAAACCAAGTTCCTGTCCCAAATTGAGAG
Seq C2 exon
TGACCGTTTGGCGCTACTGCAGGTCAGGTCTATTCTCCAGCATCTGGGTCTGGACAGCACATGCGATGACAGTATCATCGTCAAGGAGGTTTGTGGAGCTGTTTCTCGTCGAGCAGCTCAGCTCTGTGGAGCAGGAATGGCTGCTGTTGTGGATAAAATCCGGGAGAACCGTGGACTGGATCATCTGGACATCACTGTTGGAGTGGATGGCACCCTGTATAAGCTCCATCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039452-'19-22,'19-21,20-22=AN
Average complexity
A_S
Mappability confidence:
86%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(25.4=100)
A:
PF0372711=Hexokinase_2=FE(21.7=100)
C2:
PF0372711=Hexokinase_2=FE(32.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTAAGTGGAGAGGAGGGC
R:
CTCGACGAGAAACAGCTCCAC
Band lengths:
250-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]