BtaEX6106345 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009739 | CSMD1
Description
CUB and Sushi multiple domains 1 [Source:HGNC Symbol;Acc:HGNC:14026]
Coordinates
chr27:1154359-1168045:-
Coord C1 exon
chr27:1167965-1168045
Coord A exon
chr27:1166786-1166899
Coord C2 exon
chr27:1154359-1154547
Length
114 bp
Sequences
Splice sites
3' ss Seq
ATGCATGTGGACTCTTTCAGGAG
3' ss Score
5.19
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
CATTTCAGCTCAAGAAATGTCAGCCTCCCCCAGCAGTTCCACAGGCAGAAATGCTTACAGAGGATGAGGATTTTGAAATAG
Seq A exon
GAGACTTCGTGAAGTACCAGTGCCACCCTGGGTACACGCTGTCTGGGATGGACACACTGACCTGTAAGCTCAGCTCCCAGCTACAGTTTGAAGGTTCCCTGCCGACATGTGAAG
Seq C2 exon
CACAATGCCCAGCCAATGAAGTCCGGACAGAATCCTCTGGCGTCATCCTCAGCCCAGGGTATCCAGGCAACTATTTTAACTCCCAGACCTGCTCCTGGAGCATCCGAGTGGAACCAAACTACAATATCACCATCTTTGTAGACACATTCCAAAGTGAAAAGCAATTTGATGCACTGGAAGTATTTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009739-'45-45,'45-44,46-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(36.2=75.0)
A:
PF0008415=Sushi=PD(62.1=92.3)
C2:
PF0043115=CUB=PU(56.0=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAAATGTCAGCCTCCCCC
R:
ACTTCCAGTGCATCAAATTGCT
Band lengths:
252-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]