DreEX6073816 @ danRer10
Exon Skipping
Gene
ENSDARG00000001559 | csmd2
Description
CUB and Sushi multiple domains 2 [Source:ZFIN;Acc:ZDB-GENE-030616-39]
Coordinates
chr19:36604200-36628422:-
Coord C1 exon
chr19:36628342-36628422
Coord A exon
chr19:36625207-36625320
Coord C2 exon
chr19:36604200-36604388
Length
114 bp
Sequences
Splice sites
3' ss Seq
GACTTTCTTTCTTTCCACAGGTG
3' ss Score
13.38
5' ss Seq
ATAGTAAGC
5' ss Score
5.26
Exon sequences
Seq C1 exon
CCTATAGACTACAGTTTTGCTTGCCACCTCCCATCATTCCTAATGCAGAAATTCTGATGGCCAGTAAAGAATTCAAGATTG
Seq A exon
GTGATATTGTGCGTTACAGATGTTTGCCAGGATATCATCTTAATGGAAACAGCATTCAAACCTGTCGCCTCGGGACGCATCTCGAGTTTGATGGACCTCCACCTTCCTGTGATA
Seq C2 exon
TTACCTGTCCCATGAACGAGGTGCTGACGGCCTCTACAGGGGTGATCCTTAGTCAGTCTCCGGGCAGCAGCCTGCCACACTTTGAGTCCTGCTCCTGGTTGGTGAAGGTGGATTCGGGCTACAACATCACTTTCACTGTTGAACATTTTCAGACCAGCAGGCAGTTTGATGAGCTGGAAATATTTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001559-'53-54,'53-53,54-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(36.2=75.0)
A:
PF0008415=Sushi=PD(62.1=92.3)
C2:
PF0043115=CUB=PU(56.0=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGCTTGCCACCTCCCATC
R:
AGCTCATCAAACTGCCTGCTG
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]