MmuEX0012896 @ mm10
Exon Skipping
Gene
ENSMUSG00000060924 | Csmd1
Description
CUB and Sushi multiple domains 1 [Source:MGI Symbol;Acc:MGI:2137383]
Coordinates
chr8:15992594-15999860:-
Coord C1 exon
chr8:15999780-15999860
Coord A exon
chr8:15998752-15998865
Coord C2 exon
chr8:15992594-15992782
Length
114 bp
Sequences
Splice sites
3' ss Seq
TATTGGGTTGACTCTTTCAGGGG
3' ss Score
6.22
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
CATTTCAGCTGAAGAGGTGCCCGCCTCCCCCAGCAGTGCCACAGGCTGACCTGCTTACAGAAGATGAGGACTTTGAAATAG
Seq A exon
GGGACTTCGTGAAGTACCAGTGCCATCCAGGGTACACACTGTTGGGAAGTGACACCCTGACATGCAAGCTCAGCTCACAGCTACTGTTCCAAGGCTCTCCACCCACCTGTGAAG
Seq C2 exon
CACAATGCCCAGCAAATGAAGTGCGAACAGAGTCTTCTGGGGTGATTCTCAGTCCCGGGTACCCAGGCAACTATTTTAACTCCCAGACATGTGCTTGGAGTATTAAAGTGGAGCCAAACTTCAACATCACACTCTTTGTGGACACATTCCAAAGTGAAAAGCAATTTGATGCACTGGAAGTGTTTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060924_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.000 C2=0.047
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(36.2=75.0)
A:
PF0008415=Sushi=PD(62.1=92.3)
C2:
PF0043115=CUB=PU(56.0=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCAGCTGAAGAGGTGCCC
R:
TCCAGTGCATCAAATTGCTTTTCA
Band lengths:
258-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types