BtaEX6107576 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000179 | RPUSD1
Description
Bos taurus RNA pseudouridylate synthase domain containing 1 (RPUSD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075874]
Coordinates
chr25:667182-668257:-
Coord C1 exon
chr25:668107-668257
Coord A exon
chr25:667381-667567
Coord C2 exon
chr25:667182-667305
Length
187 bp
Sequences
Splice sites
3' ss Seq
GCACTTGCCCCGCATTGCAGCCA
3' ss Score
6.51
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GGCTGAGACCGCAGGCCGGGCCCGGCCAGGCGCACCTCTGTGGCCTGAATTATTGCTCCGGTACCACTGGGCCACGAGGCGCGGGACGCGAGTTCGGGAACCAGGGACAGGTCGCGGCATCGGAAGCCCGGACGGCGCAGCCCAGCTGCAG
Seq A exon
CCACCATGGAGCCAGGCAGCGTGGAGAATCTGTGTGTCGTGTACCGGAGCCATGACTTCCTGGTGGTGAACAAGCACTGGGACGTACGCATCGACAGCAAAGCCTGGCGGGAGACGCTGACCCTCCAGAAGCAGCTGCGGCACCGCTTCCCAGAGCTGGCCGACCCCGACACCTACTACGGGTTCAG
Seq C2 exon
GTTCTGCCACCAACTGGACTTCTCCACCAGCGGGGCACTCTGTGTGGCTTTGAACAAGGCAGCCGCAGGCAGTGCATACAGGTGCTTCAAGGACCGGCGAGTCACCAAGGCTTATCTGGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000179-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0084917=PseudoU_synth_2=PU(26.5=72.1)
C2:
PF0084917=PseudoU_synth_2=FE(24.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCTCTGTGGCCTGAATTA
R:
GAGCCAGATAAGCCTTGGTGAC
Band lengths:
242-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]