RnoEX0077139 @ rn6
Exon Skipping
Gene
ENSRNOG00000023639 | Rpusd1
Description
RNA pseudouridylate synthase domain containing 1 [Source:RGD Symbol;Acc:1304934]
Coordinates
chr10:15099009-15100094:+
Coord C1 exon
chr10:15099009-15099242
Coord A exon
chr10:15099700-15099839
Coord C2 exon
chr10:15099971-15100094
Length
140 bp
Sequences
Splice sites
3' ss Seq
ATCTGTCCATCGTGTACCAGAGC
3' ss Score
6.68
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GACTAAGAAGGTGCGTGCGCAGACCATTCGGGAAGAGCTTCGCCTTCCTTCAGAGGGCGGAGCTCCATGCCGGGAATGCCATTGGCCAGTACGACCATCCATTAGCCAGGTGGAATGGGCAGGGTGAAGGCAGAGCTGCGCGGCAGCCAGGCCAAGACCTGGTTCCTTGTATAGGAAAGCTGGGTTGGATGCAGGGCTGAGACGTGACATCCTGGTCCTTTGGCCCTGTTGCAG
Seq A exon
AGCAACGACTTCCTGGTGGTGAACAAGCACTGGGACCTGCGCATTGATAGCAAGACCTGGCGTGAGACCCTGACCCTACAGAAGCAACTCCGACACCACTTCCCAGAGCTGGCTGACCCTGACACCTGCTATGGGTTCAG
Seq C2 exon
GTTCTGCCACCAACTGGACTTCTCCACCAGCGGGGCGCTGTGCGTGGCCCTGAATAAAGCAGCTGCGGGCAGCGCTTATAAGTGCTTCAAGGAGCGACGAGTTACCAAAGCCTACCTGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023639-'0-4,'0-3,1-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0160011=Corona_S1=PU(44.4=98.4),PF0084917=PseudoU_synth_2=PU(26.5=72.1)
C2:
PF0160011=Corona_S1=FE(30.4=100),PF0084917=PseudoU_synth_2=FE(24.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCCATTAGCCAGGTGGA
R:
TGGTAACTCGTCGCTCCTTGA
Band lengths:
248-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]