MmuEX0040553 @ mm9
Exon Skipping
Gene
ENSMUSG00000041199 | Rpusd1
Description
RNA pseudouridylate synthase domain containing 1 [Source:MGI Symbol;Acc:MGI:1919186]
Coordinates
chr17:25864696-25865591:+
Coord C1 exon
chr17:25864696-25864792
Coord A exon
chr17:25865148-25865336
Coord C2 exon
chr17:25865468-25865591
Length
189 bp
Sequences
Splice sites
3' ss Seq
TCACTCCCACCTGCGTGCAGCCC
3' ss Score
7.33
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GCGCGCCAGCCAGGCCAAGACCTGGTTCCTAGTATAGGGAAGCGAGGTTGGATGCAGAGCTGAGAATTGACATCCTGGTCCCTTGGCCCTGTTGCAG
Seq A exon
CCCCACCATGGAGCCTGGCAGCATGGAAAATCTGTCCATCGTGTACCAGAGCAGCGACTTCCTGGTGGTGAACAAGCACTGGGACCTGCGCATTGATAGCAAGACCTGGCGGGAGACCCTGACCCTACAGAAGCAGCTCCGACACCACTTCCCAGAGCTGGCTGACCCTGACACCTGCTATGGGTTCAG
Seq C2 exon
GTTCTGCCACCAGCTGGACTTCTCCACCAGTGGGGCACTGTGCGTAGCCCTGAATAAGGCAGCTGCGGGCAGTGCTTATAAATGCTTCAAGGAACGGCGAGTCACCAAAGCCTACCTGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041199_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0160011=Corona_S1=PU(44.4=98.4),PF0084917=PseudoU_synth_2=PU(26.5=72.1)
C2:
PF0160011=Corona_S1=FE(30.4=100),PF0084917=PseudoU_synth_2=FE(24.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCCAGGCCAAGACCT
R:
CAGGTAGGCTTTGGTGACTCG
Band lengths:
210-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types