BtaEX6108012 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014903 | ABCA3
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 3 (ABCA3), mRNA. [Source:RefSeq mRNA;Acc:NM_001113746]
Coordinates
chr25:1801835-1802937:-
Coord C1 exon
chr25:1802718-1802937
Coord A exon
chr25:1802280-1802438
Coord C2 exon
chr25:1801835-1802007
Length
159 bp
Sequences
Splice sites
3' ss Seq
CCTGTGCTTCCTCCCCACAGCGG
3' ss Score
12.29
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTGGTGTTCAAGGCCTTCGACGTGCACGCCTTCACGCGGGACGGGCACGTGGCCGACGCCCTGCTGCTGCTCACGCTCTACGGCTGGGCCATCATCCCCCTCATGTACCTGATGAGCTTCTTTTTCTCTGGGGCGGCCACCGCCTACACGCGGCTGACCATATTCAACATCCTGTCGGGCATCGCCACCTTCCTCGTTGTCACCATCATGCGCATCCCAG
Seq A exon
CGGTCAAGTTAGAAGAACTTTCCAGAACCCTGGACCGCGTGTTCCTGGTGCTTCCCAACCACTGCTTGGGGATGGCAGTGAGCAACTTCTACGAGAACTACGAAACCAGACGGTACTGCACCTCCTCCGACGTGGCGGCCCACTACTGCCGGAAATACA
Seq C2 exon
ACATCCAGTACCAAGAGAACTTCTACGCGTGGAGCACCCCGGGGGTCGGCAGGTTCGTGACCTCCATGGCCGCCTCAGGGTTTGCCTACCTCACCCTGCTCTTCCTCGTGGAGGCCGACCTGCTATGGAGGCTGAAGACCTGCCTGTGTGCCTTCCAGAGGAGGCGGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014903-'26-29,'26-28,27-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(18.2=100)
A:
PF126982=ABC2_membrane_3=FE(13.2=100)
C2:
PF126982=ABC2_membrane_3=PD(8.7=60.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTCTTTTTCTCTGGGGCG
R:
TCTTCAGCCTCCATAGCAGGT
Band lengths:
244-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]