BtaEX6108239 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000026403 | CREBBP
Description
Bos taurus CREB binding protein (CREBBP), mRNA. [Source:RefSeq mRNA;Acc:NM_001164022]
Coordinates
chr25:3079595-3083602:-
Coord C1 exon
chr25:3083414-3083602
Coord A exon
chr25:3081553-3081969
Coord C2 exon
chr25:3079595-3079774
Length
417 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCTTCTGCCTGTCAGGGG
3' ss Score
8.71
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
ATGGCCATTTCTCCGTCCCGAATGCCTCAGCCTCCGAACATGATGGGCGCGCACGCCAACAGCATGATGGCCCAGGCGCCTGCGCAGAGCCAGTTCCTCCCGCAGAGCCAGTTCCCGTCGTCCAGCGGGGCGCTGAGTGTGAGCAGCGTGGGCATGGGGCAGCCGGCGGCGCAGGCTGGCGTTCCACAG
Seq A exon
GGGCAAGTGCCAGGGGCCGCTCTTCCCAACCCCCTGAACATGCTTGGGCCCCAGGCCAGCCAGCTGCCTTGCCCACCAGTGACACAGCCTCCGCTGCATCAGACCCCGCCTCCCGCCTCCACGGCCGCCGGCATGCCGTCTCTGCAGCACCCAGCAGCTCCCGGGGTGACGCCCCCCCAGCCAGCTGCGCCTACCCAGCCTTCAACTCCCGCGTCGTCTTCCGGGCAGACTCCCACCCCGACTCCTGGCTCCGTGCCCAGCGCCAGCCAGACGCAGAGTACTCCTACGGTCCAGGCAGCCGCCCAGGCCCAGGTGACCCCGCAGCCTCAGACCCCAGTGCAGCCTCCATCCGTGGCCACCCCACAGTCATCGCAGCAGCAGCCAACACCTGTGCACACGCAGCCCCCCGGCACCCCG
Seq C2 exon
CTTTCCCAGACAGCAGCCAGCATTGATAACAGGGTCCCCACTCCATCCTCAGTGGCCAGCGCCGAAACCAACTCCCAGCAGCCAGGCCCCGAGGTGCCACTGCTGGAGATGAAGGCTGAGATCAAGACCGAGGACACAGAGCCCGATGCTGGGGAGCCCAAGGGAGAGCCTGGGGCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026403-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTCTCCGTCCCGAATGCC
R:
CAGGCTCTCCCTTGGGCT
Band lengths:
356-773
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]