GgaEX6012975 @ galGal4
Exon Skipping
Gene
ENSGALG00000007762 | CREBBP
Description
CREB binding protein [Source:HGNC Symbol;Acc:HGNC:2348]
Coordinates
chr14:12523927-12526544:-
Coord C1 exon
chr14:12526356-12526544
Coord A exon
chr14:12524757-12525173
Coord C2 exon
chr14:12523927-12524106
Length
417 bp
Sequences
Splice sites
3' ss Seq
GAGAATCTCTTTCCCTCCAGCAG
3' ss Score
7.17
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
ATGGCAATGTCTCCTTCCCGAATGCCTCAGCCACAGAACATGATGGGAGCCCATTCCAACAACATGATGGGTCAGGCTCCTACCCAGAACCAATTCCTGCCCCAGAATCAGTTTCCAGCTTCCACAGGGGCTATGAATGTGAACAACGTTGGCATGGGCCAGTCAGCAGCCCAGGCAGGGGTGGCACAG
Seq A exon
CAGGGGCAGGTTCCCAGTGCTGCTCTTCCCAACTCCATGAACATGCTAGGACCACAGAGTGGTCAGCTATGCCCACCAGTGACCCAGCCGCCTCTGCATCAGACTACACCTCCTGTGTCCACTGCTGCTGGGATGCCGCCTATTCAGCACCAAACACCAACTGGAATGACTCCTCCTCAGCCAGCAGCACCCACTCAGCCATCCACACCAGTCTCATCTTCAGGACAAACCCCTACACCGACCCCGGGTTCTGTTCCCAACGCGACCCAGACACAAAGCACGCCTACGGGACAGACTGCAGCACAGGCTCAAGTCACACCGCAGCCTCAGACCCCAGTTCAGCCCCAGTCTGTGCCAACCCCACAGCCTTCCCAGCAACAGCCAACATCTGTGCAGGCACAGCCACCTGGCACTCCA
Seq C2 exon
CTATCCCAGGCAGCAGCTAGTATTGATAACAGGGTCCCCACCCCTGCCTCAGTTGCTAGTGCTGATACGAATTCCCAGCAACTAGGACCAGATGCACCAATGCTAGAAAGCAAATCAGAAGTTAAAACTGAAGAAACTGAGCCAGAGACTAGTGAGACACAAGTGGAAGCTAAGACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007762-'19-20,'19-18,20-20=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCTCCTTCCCGAATGCCT
R:
AGCTTCCACTTGTGTCTCACT
Band lengths:
354-771
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]